PreDs is a server making the prediction of dsDNA-binding site on protein surfaces, according to our prediction method developed by focusing our attention on the shape of the molecular surface and the electrostatic potential on the surface.


Please input your E-mail address, your name and job title, and upload a protein coordinate file with PDB format of the query structure or PDB ID. E-mail address is essential since we will return a mail with a URL at which you will find the results.


E-mail Address
Your Name
Job Title


Choose uploading a coordinate file or inputting PDB ID.
If both boxes are filled, the server chooses using the uploaded coordinates.
Upload Coordinate File
Input PDB ID







Reference :
Tsuchiya, Y., Kinoshita, K., Nakamura, H.,
"PreDs: a server for predicting dsDNA-binding site on protein molecular surfaces", Bioinformatics, 21(2005), 1721-1723.


Yuko Tsuchiya, Kengo Kinoshita & Haruki Nakamura
(Institute for Protein Research, OSAKA UNIV.)

Mail to pre-s_admin

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Introduction
Usage
Prediction Method
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last updated 2010.03.11